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Mann, Scott, Chen, Yi-Ping Phoebe and Eaton, Luke 2004, A computational framework for nucleic acid sub-sequence identification, in BIBE 2004: Fourth IEEE Symposium on BioInformatics and BioEngineering proceedings, IEEE, Piscataway, N.J., pp. 467-474. 411 114
Rong, Jia, Li, Gang and Chen, Yi-Ping Phoebe 2009, Acoustic feature selection for automatic emotion recognition from speech, Information processing & management, vol. 45, no. 3, pp. 315-328. 357 10 Cited 11 times in Scopus11
Rong, J., Chen, Yi-Ping Phoebe, Chowdhury, Morshed and Li, Gang 2007, Acoustic features extraction for emotion recognition, in 6th IEEE/ACIS International Conference on Computer and Information Science : (ICIS 2007) in conjunction with 1st IEEE/ACIS International Workshop on e-Activity (IWEA 2007) : proceedings : 11-13 July, 2007, Melbourne, Australia, IEEE Xplore, Piscataway, N.J., pp. 419-424. 480 233
An, Jiyuan, Yu, Jeffrey Xu, Ratanamahatana, Chotirat Ann and Chen, Yi-Ping Phoebe 2007, A dimensionality reduction algorithm and its application for interactive visualization, Journal of visual languages and computing, vol. 18, no. 1, pp. 48-70. 412   Cited 2 times in Scopus2
Chen, Yi-Ping, Rong, Jia and Li, Gang 2010, Advanced graph mining methods for protein analysis, in Biological Data Mining, Chapman & Hall/CRC, Boca Raton, Fla., pp.111-136. 152 5
Song, Il-Yeol, Piattini, Mario, Chen, Yi-Ping Phoebe, Hartmann, Sven, Grandi, Fabio, Trujillo, Juan, Opdahl, Andreas, Ferri, Fernando, Grifoni, Patrizia, Caschera, Maria, Rolland, Colette, Woo, Carson, Salinesi, Camille, Zimanyi, Esteban, Claramunt, Christophe, Frasincar, Flavius, Houben, Geert-Jan and Thiran, Philippe 2008, Advances in conceptual modeling - challenges and opportunities : ER 2008 workshops CMLSA, ECDM, FP-UML, M2AS, RIGiM, SeCoGIS, WISM Barcelona, Spain, October 20-23, 2008 proceedings Springer, Berlin, Germany. 316  
Chen, Qingfeng, Chen, Yi-Ping Phoebe, Zhang, C. and Zhang, S. 2005, A framework for merging inconsistent beliefs in security protocol analysis, in International Workshop on Data Engineering Issues in E-Commerce : DEEC 2005 : proceedings : 9 April 2005, Tokyo, Japan, IEEE Xplore, Piscataway, N.J., pp. 119-124. 403 116
An, Jiyuan, Chen, Yi-Ping Phoebe and Keogh, Eamonn 2004, A grid-based index method for time warping distance, Lecture notes in computer science, vol. 3129, pp. 65-75. 398   Cited 1 times in Scopus1
Xi, Yanping, Chen, Yi-Ping Phoebe, Cao, Ming, Wang, Weirong and Wang, Fei 2009, Analysis on relationship between extreme pathways and correlated reaction sets, BMC bioinformatics, vol. 10, no. Supplement 1, pp. S58-S71. 299 2 Cited 2 times in Scopus2
Chen, Yi-Ping Phoebe and Chen, Qingfeng 2006, Analyzing inconsistency toward enhancing integration of biological molecular databases, in Proceedings of the 4th Asia-Pacific Bioinformatics Conference : Taipei, Taiwan, 13-16 February 2006, Imperial College Press, London, England, pp. 197-206. 354  
Chen, Qingfeng and Chen, Yi-Ping Phoebe 2005, Analyzing security protocols using association rule mining, Lecture notes in computer science, vol. LNAI 3809, pp. 245-253. 353  
Knapp, Keith and Chen, Yi-Ping Phoebe 2007, An evaluation of contemporary hidden Markov model genefinders with a predicted exon taxonomy, Nucleic acids research, vol. 35, no. 1, pp. 317-324. 349   Cited 15 times in Scopus15
Lau, Raymond Y.K., Tang, Maolin, Wong, On, Milliner, Stephen W. and Chen, Yi-Ping Phoebe 2006, An evolutionary learning approach for adaptive negotiation agents, International journal of intelligent systems, vol. 21, no. 1, pp. 41-72. 378   Cited 15 times in Scopus15
An, Jiyuan, Chen, Yi-Ping Phoebe, Xu, Qinying and Zhou, Xiaofang 2005, A new indexing method for high dimensional dataset, Lecture notes in computer science, vol. 3453, pp. 385-397. 342   Cited 1 times in Scopus1
Prompramote, Supawan and Chen, Yi-Ping Phoebe 2005, ANNODA: tool for integrating molecular-biological annotation data, in 21st International Conference on Data Engineering workshops, 2005, IEEE Xplore, Piscataway, N.J., pp. 1166-1174. 336 128
Mann, Scott, Li, Jinyan and Chen, Yi-Ping Phoebe 2007, A pHMM-ANN based discriminative approach to promoter identification in prokaryote genomic contexts, Nucleic acids research, vol. 35, no. 2, pp. 1-7. 406   Cited 8 times in Scopus8
Tjondronegoro, D., Chen, Yi-Ping Phoebe and Joly, Adrien 2008, A scalable and extensible segment-event-object-based sports video retrieval system, ACM transactions on multimedia computing communications and applications, vol. 4, no. 2, pp. 1-40. 325   Cited 2 times in Scopus2
An, Jiyuan and Chen, Yi-Ping Phoebe 2006, A similarity search algorithm to predict protein structures, Lecture notes in computer science, vol. 4252, pp. 1305-1312. 325  
Tjondronegoro, Dian, Chen, Yi-Ping Phoebe and Pham, Binh 2005, A statistical-driven approach for automatic classification of events in AFL video highlights, in Proceedings of the twenty eighth Australasian Computer Science Conference (ACSC 2005) Newcastle, Australia, January, 2005, Australian Computer Society, Sydney, N.S.W., pp. 209-218. 377 1
Wu, Sheng-Tang, Li, Yuefeng, Xu, Yue, Pham, Binh and Chen, Yi-Ping Phoebe 2004, Automatic pattern-taxonomy extraction for web mining, in IEEE/WIC International Conference on Web Intelligence (WI 2004) : Beijing, China, September 20-24, 2004 : proceedings, IEEE Xplore, Piscataway, N.J., pp. 242-248. 410 423
Mann, Scott and Chen, Yi-Ping Phoebe 2010, Bacterial genomic G + C composition-eliciting environmental adaptation, Genomics, vol. 95, no. 1, pp. 7-15. 147 6 Cited 11 times in Scopus11
Chen, Yi-Ping Phoebe 2005, Bioinformatics technologies Springer-Verlag, Berlin, Germany. 382  
Garcia, Alexander, Thoraval, Samuel, Garcia, Leyla J., Chen, Yi-Ping Phoebe and Ragan, Mark A. 2005, Bioinformatic workflows : G-PIPE as an implementation, in NETTAB 2005: Workflows management: new abilities for the biological information overflow, Network Tools and Applications in Biology, United States, pp. 61-64. 326 73
Shi, Wei, Zhou, Wanlei and Chen, Yi-Ping Phoebe 2005, Biological sequence assembly and alignment, in Bioinformatics Technologies, Springer-Verlag, Berlin, Germany, pp.243-261. 429  
Song, Xiao-Feng, Chen, Wei-Min, Chen, Yi-Ping Phoebe and Jiang, Bin 2009, Candidate working set strategy based SMO algorithm in support vector machine, Information processing & management, vol. 45, no. 5, pp. 584-592. 304 2 Cited 5 times in Scopus5
Chen, Yan, Timms, Peter and Chen, Yi-Ping Phoebe 2007, CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data, Biomolecular engineering, vol. 24, no. 6, pp. 603-608. 401   Cited 5 times in Scopus5
Tjondronegoro, Dian W., Chen, Yi-Ping Phoebe and Pham, Binh 2004, Classification of self-consumable highlights for soccer video summaries, in 2004 International Conference on Multimedia and Expo (ICME) : June 27-30, 2004, Taipei, Taiwan, IEEE Xplore, Piscataway, N.J., pp. 579-582. 371 118
Jiang, Da, Zhou, Shuigeng and Chen, Yi-Ping Phoebe 2009, Compensatory Ability to Null Mutation in Metabolic Networks, Biotechnology and bioengineering, vol. 103, no. 2, pp. 361-369. 282 2 Cited 3 times in Scopus3
An, Jiyuan and Chen, Yi-Ping Phoebe 2004, Concept learning of text documents, in IEEE/WIC International Conference on Web Intelligence (WI 2004) : Beijing, China, September 20-24, 2004 : proceedings, IEEE Xplore, Piscataway, N.J., pp. 698-701. 337 83
Tjondronegoro, Dian, Chen, Yi-Ping Phoebe and Pham, Binh 2005, Content-based video indexing for sports applications using integrated multi-modal approach, in Proceedings of the MM 2005 & co-located workshops : November 6-11, 2005, Singapore, Association for Computing Machinery, New York, N.Y., pp. 1035-1036. 364 1
Sajjanhar, Atul, Hou, Jingyu and Chen, Yi-Ping Phoebe 2005, Content exploration for e-learning using XML Web services, in AMT 2005 : Proceedings of the 2005 International Conference on Active Media Technology : (AMT2005) : May 19-21, 2005, Kagawa International Conference Hall, Takamatsu, Kagawa, Japan, IEEE Xplore, Piscataway, N.J., pp. 266-266. 335 73
Hou, Jingyu and Chen, Yi-Ping Phoebe 2009, Data pre-processing for more effective gene clustering, in Proceedings of the 2nd International Joint Conference on Computational Sciences and Optimization, CSO 2009, IEEE Computer Society, Los Alamitos, Calif., pp. 710-713. 350 65
An, Jiyuan, Chen, Yi-Ping Phoebe and Chen, Hanxiong 2005, DDR: an index method for large time-series datasets, Information systems, vol. 30, no. 5, pp. 333-348. 351   Cited 9 times in Scopus9
An, Jiyuan and Chen, Yi-Ping Phoebe 2006, Depth first rule heneration for text categorization, Frontiers in artificial intelligence and applications: advances in intelligent IT: active media technology, vol. 138, pp. 302-306. 350  
Chen, Qingfeng, Chen, Yi-Ping Phoebe, Zhang, Shichao and Zhang, Chengqi 2006, Detecting collusion attacks in security protocols, Lecture notes in computer science, vol. 3841, pp. 297-306. 349   Cited 3 times in Scopus3
Chen, Qingfeng, Chen, Yi-Ping Phoebe and Zhang, Chengqi 2007, Detecting inconsistency in biological molecular databases using ontologies, Data mining and knowledge discovery, vol. 15, no. 2, pp. 275-296. 375   Cited 8 times in Scopus8
Chen, Qingfeng and Chen, Yi-Ping Phoebe 2009, Discovery of structural and functional features in RNA pseudoknots, IEEE transactions on knowledge and data engineering, vol. 21, no. 7, pp. 974-984. 290 4 Cited 3 times in Scopus3
Nahar, Jesmin, Tickle, Kevin S., Ali, A. B. M. Shawkat and Chen, Yi-Ping 2009, Early breast cancer identification : Which way to go? Microarray or image based computer aided diagnosis!, in NSS 2009 : Proceedings of the third International Conference on Network and System Security, IEEE, Piscataway, N. J., pp. 456-461. 290 74
Chen, Yi-Ping Phoebe and Wong, Limsoon 2006, Editorial, Journal of bioinformatics and computational biology, vol. 4, no. 1, pp. 5-7. 320  
Tjondronegoro, Dian W., Chen, Yi-Ping Phoebe and Pham, Binh 2006, Extensible detection and indexing of highlight events in broadcasted sports video, in Proceedings of the 29th Australasian Computer Science Conference volume 48, 2006, Hobart, Australia, January 16-19, 2006, Australian Computer Society, Sydney, N.S.W., pp. 237-246. 334  
Tjondronegoro, Dian, Chen, Yi-Ping Phoebe and Pham, Binh 2005, Extraction and classification of self-consumable sport video highlights using generic HMM, in Contested role for perspective in three-dimensional information visualisation : Proceedings of the 4th Asia Pacific International Symposium on Information Technology, IEEE Computer Society Press, Los Alamitos, Calif., pp. 200-203. 377 4
An, Jiyuan and Chen, Yi-Ping Phoebe 2009, Finding coverage using incremental attribute combinations, International journal of innovative computing, information and control, vol. 5, no. 5, pp. 1419-1428. 325 4
An, Jiyuan and Chen, Yi-Ping Phoebe 2008, Finding edging genes from microarray data, Journal of biotechnology, vol. 135, no. 3, pp. 233-240. 315   Cited 4 times in Scopus4
Subramaniam, Chinnu, An, Jiyuan, Gubbi, J. and Chen, Yi-Ping Phoebe 2007, Finding motifs in miRNA sequences, in 6th IEEE/ACIS International Conference on Computer and Information Science : (ICIS 2007) in conjunction with 1st IEEE/ACIS International Workshop on e-Activity (IWEA 2007) : proceedings : 11-13 July, 2007, Melbourne, Australia, IEEE Xplore, Piscataway, N.J., pp. 507-512. 366 117
An, Jiyuan and Chen, Yi-Ping Phoebe 2006, Finding rule groups to classify high dimensional gene expression datasets, in 18th International Conference on Pattern Recognition : proceedings : 20 - 24 August, 2006, Hong Kong, IEEE Xplore, Piscataway, N.J., pp. 1196-1199. 356 106
An, Jiyuan and Chen, Yi-Ping Phoebe 2009, Finding rule groups to classify high dimensional gene expression datasets, Computational Biology and Chemistry, vol. 33, no. 1, pp. 108-113. 283 4 Cited 5 times in Scopus5
An, Jiyuan and Chen, Yi-Ping Phoebe 2006, Finding short patterns to classify text documents, in 2006 IEEE/WIC/ACM International Conference on Web Intelligence (WI 2006 main conference proceedings) : (WI '06) : proceedings : 18-22 December, 2006, Hong Kong, China, IEEE Xplore, Piscataway, N.J., pp. 293-296. 365 131
Chen, Yi-Ping Phoebe 2005, Guest editor's introduction : Advanced techniques for bioinformatics, Journal of bioinformatics and computational biology, vol. 3, no. 1, pp. 99-102. 319  
Chen, Yi-Ping Phoebe and Chua, Tat-Seng 2006, Guest editors' : Introduction ; multimedia modelling, Visual computer, vol. 22, no. 5, pp. 300-301. 314  
Liu, Qian, Chen, Yi-Ping Phoebe and Li, Jinyan 2009, High functional coherence in k-partite protein cliques of protein interaction networks, in BIBM 2009 : Proccedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, IEEE Computer Society, Piscataway, N. J., pp. 111-117. 371 32

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