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Bioinformatic workflows : G-PIPE as an implementation

Garcia, Alexander, Thoraval, Samuel, Garcia, Leyla J., Chen, Yi-Ping Phoebe and Ragan, Mark A. 2005, Bioinformatic workflows : G-PIPE as an implementation, in NETTAB 2005: Workflows management: new abilities for the biological information overflow, Network Tools and Applications in Biology, United States, pp. 61-64.

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Title Bioinformatic workflows : G-PIPE as an implementation
Author(s) Garcia, Alexander
Thoraval, Samuel
Garcia, Leyla J.
Chen, Yi-Ping Phoebe
Ragan, Mark A.
Conference name International Workshop on new abilities for the biological information overflow (5th : 2005 : Naples, Italy)
Conference location Naples, Italy
Conference dates 5-7 October 2005
Title of proceedings NETTAB 2005: Workflows management: new abilities for the biological information overflow
Editor(s) Facchiano, A.
Romano, P.
Publication date 2005
Start page 61
End page 64
Publisher Network Tools and Applications in Biology
Place of publication United States
Summary We present G-PIPE, a graphic pipeline generator for PISE that allows the definition of pipelines, parameterization of its component methods, and storage of metadata in XML formats. Our implementation goes beyond macro capacities currently in PISE. As the entire analysis protocol is defined in XML, a complete bioinformatic experiment (linked sets of methods, parameters and results) can be reproduced or shared among users. We also discuss the role of ontologies as as guidance systems in order to provide users with the possibility to define abstract work-flows, and execute them. A relevant baseline ontology is presented. Availability: http://if-web.imb.uq.edu.au
Notes Reproduced with the specific permission of the copyright owner.
Language eng
Field of Research 080199 Artificial Intelligence and Image Processing not elsewhere classified
HERDC Research category E2 Full written paper - non-refereed / Abstract reviewed
Copyright notice ©2005, Network Tools and Applications in Biology
Persistent URL http://hdl.handle.net/10536/DRO/DU:30014488

Document type: Conference Paper
Collections: School of Information Technology
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