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MammoSapiens: eResearch of the lactation program.

Nicholas, Kevin R, Kumar, Amit, Strahm, Yvan, Powell, David, Seemann, Torsten, Daly, Kerry A., Brennan, Amelia, Menzies, Karensa, Sharp, Julie, Digby, Matthew and Lefèvre, Christophe 2008, MammoSapiens: eResearch of the lactation program., in Proceedings of eResearch Australasia 2008, Australian Department of Innovation, Industry, Science and Research, Australia, pp. 1-13.

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Title MammoSapiens: eResearch of the lactation program.
Alternative title Building online facilities for collaborative molecular and evolutionary analysis of lactation and other biological systems from gene sequences and gene expression data.
Author(s) Nicholas, Kevin R
Kumar, Amit
Strahm, Yvan
Powell, David
Seemann, Torsten
Daly, Kerry A.
Brennan, Amelia
Menzies, Karensa
Sharp, Julie
Digby, Matthew
Lefèvre, Christophe
Conference name eResearch Australasia ( 2008 : Melbourne, Vic)
Conference location Melbourne, Australia
Conference dates 28 September - 3 October 2008
Title of proceedings Proceedings of eResearch Australasia 2008
Editor(s) Wyborn, Lesley
McMillan, Patricia
Publication date 2008
Conference series eResearch Australasia Conference
Start page 1
End page 13
Publisher Australian Department of Innovation, Industry, Science and Research
Place of publication Australia
Summary Delivering bioinformatics power to life science researchers inevitably runs into problems of limited computing resources in the context of exponentially increasing data sources, access time, costs, lack of skills and, rapidly evolving technology and software tools with poorly defined standards. In this context the development of e-facilities to best enable collaborative research often needs to be customized to specific project applications in close cooperation with the experimentalist users and, to be concerned with the storage and management of results to allow more consistency and traceability of e-results on a broad access data mining platform.

Here we showcase an internet based eResearch platform using the PHP/MySQL paradigm for the collaborative, integrative and comparative analysis of lactation related gene sequences and gene expression experiments to support lactation research. We also illustrate how these resources are used, how they enable research by allowing meta-analysis of data and results and, how the bottom-up development of customized eResearch components can lead to the production of more generic functional software tools and eResearch environments for deployment to a larger number of biological research users working on other bio-systems.
Language eng
Field of Research 089999 Information and Computing Sciences not elsewhere classified
Socio Economic Objective 970108 Expanding Knowledge in the Information and Computing Sciences
HERDC Research category E1 Full written paper - refereed
Copyright notice ©2008, The Authors
Persistent URL http://hdl.handle.net/10536/DRO/DU:30018360

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