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A survey of cloud-based service computing solutions for mammalian genomics

Church,PC and Goscinski,AM 2014, A survey of cloud-based service computing solutions for mammalian genomics, IEEE Transactions on Services Computing, vol. 7, no. 4, pp. 726-740, doi: 10.1109/TSC.2014.2353645.

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Title A survey of cloud-based service computing solutions for mammalian genomics
Author(s) Church,PC
Goscinski,AM
Journal name IEEE Transactions on Services Computing
Volume number 7
Issue number 4
Start page 726
End page 740
Total pages 15
Publisher IEEE
Place of publication Piscataway, N.J.
Publication date 2014-10-01
ISSN 1939-1374
Keyword(s) Computer systems organization: general-emerging technologies
General literature: introductory and survey
Software/software engineering: distributed programming
Science & Technology
Technology
Computer Science, Information Systems
Computer Science, Software Engineering
Computer Science
HPC APPLICATIONS
NORMALIZATION
ARCHITECTURE
NAMD
Summary Cloud-based service computing has started to change the way how research in science, in particular biology, medicine, and engineering, is being carried out. Researchers in the area of mammalian genomics have taken advantage of cloud computing technology to cost-effectively process large amounts of data and speed up discovery. Mammalian genomics is limited by the cost and complexity of analysis, which require large amounts of computational resources to analyse huge amount of data and biology specialists to interpret results. On the other hand the application of this technology requires computing knowledge, in particular programming and operations management skills to develop high performance computing (HPC) applications and deploy them on HPC clouds. We carried out a survey of cloud-based service computing solutions, as the most recent and promising instantiations of distributed computing systems, in the context their use in research of mammalian genomic analysis. We describe our most recent research and development effort which focuses on building Software as a Service (SaaS) clouds to simplify the use of HPC clouds for carrying out mammalian genomic analysis.
Language eng
DOI 10.1109/TSC.2014.2353645
Field of Research 080501 Distributed and Grid Systems
Socio Economic Objective 970108 Expanding Knowledge in the Information and Computing Sciences
HERDC Research category C1 Refereed article in a scholarly journal
ERA Research output type C Journal article
Copyright notice ©2014, Institute of Electrical and Electronics Engineers
Persistent URL http://hdl.handle.net/10536/DRO/DU:30070438

Document type: Journal Article
Collection: School of Information Technology
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