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Selected approaches and frameworks to carry out genomic data provision and analysis on the cloud

Church, Philip C. and Goscinski, Andrzej M. 2015, Selected approaches and frameworks to carry out genomic data provision and analysis on the cloud, Scalable computing, vol. 16, no. 1, pp. 19-35, doi: 10.12694/scpe.v16i1.1058.

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Title Selected approaches and frameworks to carry out genomic data provision and analysis on the cloud
Author(s) Church, Philip C.
Goscinski, Andrzej M.
Journal name Scalable computing
Volume number 16
Issue number 1
Start page 19
End page 35
Total pages 17
Publisher West University of Timisoara
Place of publication Timisoara, Romania
Publication date 2015-01-01
ISSN 1895-1767
Keyword(s) Bio-informatics
HPC
Software as a service
Summary While High Performance Computing clouds allow researchers to process large amounts of genomic data, complex resource and software configuration tasks must be carried out beforehand. The current trend exposes applications and data as services, simplifying access to clouds. This paper examines commonly used cloud-based genomic analysis services, introduces the approach of exposing data as services and proposes two new solutions (HPCaaS and Uncinus) which aim to automate service development, deployment process and data provision. By comparing and contrasting these solutions, we identify key mechanisms of service creation, execution and data access required to support non-computing specialists employing clouds.
Language eng
DOI 10.12694/scpe.v16i1.1058
Field of Research 080501 Distributed and Grid Systems
Socio Economic Objective 970108 Expanding Knowledge in the Information and Computing Sciences
HERDC Research category C1 Refereed article in a scholarly journal
ERA Research output type C Journal article
Copyright notice ©2015, West University of Timisoara
Persistent URL http://hdl.handle.net/10536/DRO/DU:30071907

Document type: Journal Article
Collections: School of Information Technology
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Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.