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Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia

Walker,R, Watkin,E, Tian,R, Brau,L, O'Hara,G, Goodwin,L, Han,J, Reddy,T, Huntemann,M, Pati,A, Woyke,T, Mavromatis,K, Markowitz,V, Ivanova,N, Kyrpides,N and Reeve,W 2014, Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia, Standards in genomic sciences, vol. 9, no. 3, pp. 1168-1180, doi: 10.4056/sigs.5018795.

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Title Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia
Author(s) Walker,R
Watkin,E
Tian,R
Brau,LORCID iD for Brau,L orcid.org/0000-0001-7105-8339
O'Hara,G
Goodwin,L
Han,J
Reddy,T
Huntemann,M
Pati,A
Woyke,T
Mavromatis,K
Markowitz,V
Ivanova,N
Kyrpides,N
Reeve,W
Journal name Standards in genomic sciences
Volume number 9
Issue number 3
Start page 1168
End page 1180
Total pages 13
Publisher Genomic Standards Consortium, Michigan State University
Place of publication East Lansing, Mich.
Publication date 2014
ISSN 1944-3277
Keyword(s) Betaproteobacteria
nitrogen fixation
rhizobia
root-nodule bacteria
Science & Technology
Life Sciences & Biomedicine
Genetics & Heredity
Microbiology
CEPACIA
PROPOSAL
NOV
DIVERSITY
BACTERIA
SYSTEM
GENUS
Summary Burkholderia sp. strain WSM2232 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod that was trapped in 2001 from acidic soil collected from Karijini National Park (Australia) using Gastrolobium capitatum as a host. WSM2232 was effective in nitrogen fixation with G. capitatum but subsequently lost symbiotic competence during long-term storage. Here we describe the features of Burkholderia sp. strain WSM2232, together with genome sequence information and its annotation. The 7,208,311 bp standard-draft genome is arranged into 72 scaffolds of 72 contigs containing 6,322 protein-coding genes and 61 RNA-only encoding genes. The loss of symbiotic capability can now be attributed to the loss of nodulation and nitrogen fixation genes from the genome. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.
Language eng
DOI 10.4056/sigs.5018795
Field of Research 060408 Genomics
Socio Economic Objective 970107 Expanding Knowledge in the Agricultural and Veterinary Sciences
HERDC Research category C1 Refereed article in a scholarly journal
ERA Research output type C Journal article
Copyright notice ©2014, Genomic Standards Consortium, Michigan State University
Free to Read? Yes
Use Rights Creative Commons Attribution licence
Persistent URL http://hdl.handle.net/10536/DRO/DU:30072109

Document type: Journal Article
Collections: School of Life and Environmental Sciences
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Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.