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Supporting data for “De novo assembly of the liver transcriptome of the European starling, Sturnus vulgaris”

Richardson, Mark 2017, Supporting data for “De novo assembly of the liver transcriptome of the European starling, Sturnus vulgaris” [data collection], doi: 10.4225/16/5893999965ac2.

Attached Files
Name Description MIMEType Size Downloads
final-s-vulgaris-transcriptome-trinotate.xls Data file Click to show the corresponding preview/stream 28.63MB 0
readme.txt Readme Click to show the corresponding preview/stream 1.82KB 2
s-vulgaris-final-cds.fasta Supporting material Click to show the corresponding preview/stream 21.98MB 1
s-vulgaris-final-cds1.pep Supporting material Click to show the corresponding preview/stream 8.34MB 2
s-vulgaris-final.gff Supporting material Click to show the corresponding preview/stream 35.84MB 0
s274.bam Supporting material Click to show the corresponding preview/stream application/x-gzip 1.23GB 0
s290.bam Supporting material Click to show the corresponding preview/stream application/x-gzip 1.08GB 0
unfitered-s-vulgaris-transcriptome-trin.xls Data file Click to show the corresponding preview/stream 45.53MB 0
unfitered-s-vulgaris-transcriptome.fasta Supporting material Click to show the corresponding preview/stream 73.35MB 1

Field of Research 060405 Gene Expression (incl. Microarray and other genome-wide approaches)
Type of research activity Pure basic research
Name of data collection Supporting data for “De novo assembly of the liver transcriptome of the European starling, Sturnus vulgaris”
Creator(s) Richardson, MarkORCID iD for Richardson, Mark orcid.org/0000-0002-1650-0064
Date completed 2017-02-03
ANDS collection type dataset
Description of resource 8 files
Keyword(s) Sturnus vulgaris
European starling
de novo transcriptome assembly
invasive species
RNA-seq
Language eng
Summary The European starling, Sturnus vulgaris, is a prolific and worldwide invasive species that also has served as an important model for avian ecological and invasion research. Although the genome sequence recently has become available, no transcriptome data have been published for this species. Here, we have sequenced and assembled S. vulgaris liver transcriptome. A de novo transcriptome assembly constructed 18,678 protein-coding genes of high confidence that yield 23,945 non-redundant transcripts, of which we functionally annotated 82%. The transcriptome is similar to other passerine transcriptomes in terms of size and completeness. Further, our transcriptome assembly covers 87% of the predicted transcriptome of the draft genome currently available on NCBI. The data are publicly available on NCBI and DRO as a resource to other researchers.
Contact details (email) m.richardson@deakin.edu.au
Contact details (physical) Richardson, Mark
Copyright notice ©This data is publicly available
Access conditions This data is publicly available
DOI 10.4225/16/5893999965ac2
Persistent URL http://hdl.handle.net/10536/DRO/DU:30091025

Document type: Data Collection
Collections: Datasets collection
Open Access Collection
 
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Created: Fri, 03 Feb 2017, 10:00:00 EST

Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.