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Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium)

Kumar, Heerman Kumar Sandra, Gan, Han Ming, Tan, Mun Hua, Eng, Wilhelm Wei Han, Barton, Hazel A., Hudson, Andre O. and Savka, Michael A. 2017, Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium), Journal of genomics, vol. 5, pp. 12-15, doi: 10.7150/jgen.17863.

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Title Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium)
Formatted title Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium)
Author(s) Kumar, Heerman Kumar Sandra
Gan, Han Ming
Tan, Mun Hua
Eng, Wilhelm Wei Han
Barton, Hazel A.
Hudson, Andre O.
Savka, Michael A.
Journal name Journal of genomics
Volume number 5
Start page 12
End page 15
Total pages 4
Publisher Ivyspring International Publisher
Place of publication Sydney, N.S.W.
Publication date 2017
ISSN 1839-9940
Keyword(s) Ensifer sp.
strains
sinorhizobium
Summary A total of eight Ensifer sp. strains were isolated from two pristine cave environments. One strainwas isolated from a cave water pool located in the Wind Cave National Park, South Dakota, USAand the remaining seven strains were isolated from Lechuguilla Cave of Carlsbad Caverns NationalPark, New Mexico, USA. Whole genome sequencing and comparative genomic analyses of theeight isolates compared to various type strains from the genera Ensifer and Sinorhizobiumdemonstrates that although members in these genera can be phylogenetically separated into twodistinct clades, the percentage of conserved proteins (POCP) between various type strains fromEnsifer and Sinorhizobium are consistently higher than 50%, providing strong genomic evidence tosupport the classification of the genera Ensifer and Sinorhizobium into a single genus.
Language eng
DOI 10.7150/jgen.17863
Field of Research 060408 Genomics
HERDC Research category C1.1 Refereed article in a scholarly journal
ERA Research output type C Journal article
Copyright notice ©2017, Ivyspring International Publisher
Free to Read? Yes
Use Rights Creative Commons Attribution non-commercial licence
Persistent URL http://hdl.handle.net/10536/DRO/DU:30101949

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Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.