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Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Brown, Mark V., Van De Kamp, Jodie, Ostrowski, Martin, Seymour, Justin R., Ingleton, Tim, Messer, Lauren F., Jeffries, Thomas, Siboni, Nahshon, Laverock, Bonnie, Bibiloni-Isaksson, Jaume, Nelson, Tiffanie M., Coman, Frank, Davies, Claire H., Frampton, Dion, Rayner, Mark, Goossen, Kirianne, Robert, Stan, Holmes, Bronwyn, Abell, Guy C.J., Craw, Pascal, Kahlke, Tim, Sow, Swan Li San, McAllister, Kirsty, Windsor, Jonathan, Skuza, Michelle, Crossing, Ryan, Patten, Nicole, Malthouse, Paul, Van Ruth, Paul D., Paulsen, Ian, Fuhrman, Jed A., Richardson, Anthony, Koval, Jason, Bissett, Andrew, Fitzgerald, Anna, Moltmann, Tim and Bodrossy, Levente 2018, Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative, Scientific data, vol. 5, pp. 1-10, doi: 10.1038/sdata.2018.130.

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Title Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative
Author(s) Brown, Mark V.
Van De Kamp, Jodie
Ostrowski, Martin
Seymour, Justin R.
Ingleton, Tim
Messer, Lauren F.
Jeffries, Thomas
Siboni, Nahshon
Laverock, Bonnie
Bibiloni-Isaksson, Jaume
Nelson, Tiffanie M.ORCID iD for Nelson, Tiffanie M. orcid.org/0000-0002-5341-312X
Coman, Frank
Davies, Claire H.
Frampton, Dion
Rayner, Mark
Goossen, Kirianne
Robert, Stan
Holmes, Bronwyn
Abell, Guy C.J.
Craw, Pascal
Kahlke, Tim
Sow, Swan Li San
McAllister, Kirsty
Windsor, Jonathan
Skuza, Michelle
Crossing, Ryan
Patten, Nicole
Malthouse, Paul
Van Ruth, Paul D.
Paulsen, Ian
Fuhrman, Jed A.
Richardson, Anthony
Koval, Jason
Bissett, Andrew
Fitzgerald, Anna
Moltmann, Tim
Bodrossy, Levente
Journal name Scientific data
Volume number 5
Article ID 180130
Start page 1
End page 10
Total pages 10
Publisher Nature
Place of publication London, Eng.
Publication date 2018-07-17
ISSN 2052-4463
Summary Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.
Language eng
DOI 10.1038/sdata.2018.130
HERDC Research category C1 Refereed article in a scholarly journal
Copyright notice ©2018, The Authors
Free to Read? Yes
Use Rights Creative Commons Attribution licence
Persistent URL http://hdl.handle.net/10536/DRO/DU:30112050

Document type: Journal Article
Collections: School of Medicine
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Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.