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OrthoRBH: a streamlined pipeline for mining large gene family sequences in related species

Ziemann, Mark, Kamboj, Atul and Bhave, Mrinal 2013, OrthoRBH: a streamlined pipeline for mining large gene family sequences in related species, Bioinformation, vol. 9, no. 5, pp. 267-269, doi: 10.6026/97320630009267.

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Title OrthoRBH: a streamlined pipeline for mining large gene family sequences in related species
Author(s) Ziemann, MarkORCID iD for Ziemann, Mark orcid.org/0000-0002-7688-6974
Kamboj, Atul
Bhave, Mrinal
Journal name Bioinformation
Volume number 9
Issue number 5
Start page 267
End page 269
Total pages 3
Publisher Biomedical Informatics Publishing Group
Place of publication [Singapore]
Publication date 2013
ISSN 0973-2063
Keyword(s) reciprocal blast
gene family
molecular evolution
orthology
Summary Plant and animal genomes are replete with large gene families, making the task of ortholog identification difficult and labor intensive. OrthoRBH is an automated reciprocal blast pipeline tool enabling the rapid identification of specific gene families of interest in related species, streamlining the collection of homologs prior to downstream molecular evolutionary analysis. The efficacy of OrthoRBH is demonstrated with the identification of the 13-member PYR/PYL/RCAR gene family in Hordeum vulgare using Oryza sativa query sequences. OrthoRBH runs on the Linux command line and is freely available at SourceForge.
Language eng
DOI 10.6026/97320630009267
HERDC Research category C1.1 Refereed article in a scholarly journal
Copyright notice ©2013, Biomedical Informatics
Free to Read? Yes
Use Rights Creative Commons Attribution licence
Persistent URL http://hdl.handle.net/10536/DRO/DU:30112800

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Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.