Openly accessible

Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol

Ye, W, Ren, W, Kong, L, Zhang, W and Wang, T 2016, Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol, PLoS One, vol. 11, no. 9, pp. 1-23, doi: 10.1371/journal.pone.0161949.

Attached Files
Name Description MIMEType Size Downloads
kong-transcriptomicprofiling-2016.pdf Accepted version application/pdf 4.62MB 6

Title Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol
Author(s) Ye, W
Ren, W
Kong, LORCID iD for Kong, L orcid.org/0000-0001-6219-3897
Zhang, W
Wang, T
Journal name PLoS One
Volume number 11
Issue number 9
Article ID e0161949
Start page 1
End page 23
Total pages 23
Publisher PLOS
Place of publication San Francisco, CA
Publication date 2016-09-07
ISSN 1932-6203
Keyword(s) Science & Technology
Multidisciplinary Sciences
Science & Technology - Other Topics
GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR
CELL-WALL POLYSACCHARIDE
GENOME-WIDE ANALYSIS
DEFENSE RESPONSES
DROUGHT TOLERANCE
OXYGENASE GENE
HISTONE H2A
RNA-SEQ
INOSITOL
METABOLISM
Summary Myo-insositol (MI) is a crucial substance in the growth and developmental processes in plants. It is commonly added to the culture medium to promote adventitious shoot development. In our previous work, MI was found in influencing Agrobacterium-mediated transformation. In this report, a high-throughput RNA sequencing technique (RNA-Seq) was used to investigate differently expressed genes in one-month-old Arabidopsis seedling grown on MI free or MI supplemented culture medium. The results showed that 21,288 and 21,299 genes were detected with and without MI treatment, respectively. The detected genes included 184 new genes that were not annotated in the Arabidopsis thaliana reference genome. Additionally, 183 differentially expressed genes were identified (DEGs, FDR ≤0.05, log2 FC≥1), including 93 up-regulated genes and 90 down-regulated genes. The DEGs were involved in multiple pathways, such as cell wall biosynthesis, biotic and abiotic stress response, chromosome modification, and substrate transportation. Some significantly differently expressed genes provided us with valuable information for exploring the functions of exogenous MI. RNA-Seq results showed that exogenous MI could alter gene expression and signaling transduction in plant cells. These results provided a systematic understanding of the functions of exogenous MI in detail and provided a foundation for future studies.
Language eng
DOI 10.1371/journal.pone.0161949
Indigenous content off
HERDC Research category C1.1 Refereed article in a scholarly journal
Copyright notice ©2016, Ye et al.
Free to Read? Yes
Use Rights Creative Commons Attribution licence
Persistent URL http://hdl.handle.net/10536/DRO/DU:30124096

Document type: Journal Article
Collections: Institute for Frontier Materials
Open Access Collection
GTP Research
Connect to link resolver
 
Unless expressly stated otherwise, the copyright for items in DRO is owned by the author, with all rights reserved.

Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.

Versions
Version Filter Type
Citation counts: TR Web of Science Citation Count  Cited 3 times in TR Web of Science
Scopus Citation Count Cited 0 times in Scopus
Google Scholar Search Google Scholar
Access Statistics: 12 Abstract Views, 6 File Downloads  -  Detailed Statistics
Created: Fri, 28 Jun 2019, 14:36:54 EST

Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.