Mesoporous silica nanoparticles (MSNs) with particle size of 20nm have been synthesised through the template directed method at low temperature. The pH value of the reaction solution was found to have a great impact on the morphology of the final products. The morphology of resultant MSNs were investigated through transmission electron microscope. The mesoporous structure was examined by Brunauer-Emmett-Teller and Barrett-Joyner-Halenda methods. The results suggested that the high pH value had a great effect on the morphology of the final MSNs. Higher pH value intensified the interaction between particles. The pH value less than 10 is good for the formation of nanoparticles, while at pH 12, a silica framework with heterogeneous mesopore structure can be obtained.