Heatwaves cause relative fitness decline in aquatic insects by altering life history and host-pathogen relationships - Data and R scripts

<p><br></p><p dir="ltr">Data and r scripts related to the paper.</p><p><br></p><p dir="ltr"><b>InfectTempDataStored -</b></p><p dir="ltr">Daily data from saprolegnia experimental heatwave experiment 2021. Data includes egg mass identification and the related infection, hatching and dead eggs for each day until the completion of the experiment.</p><p dir="ltr">column names</p><p dir="ltr">Date - Date of observation</p><p dir="ltr">Day - Numbered day of experiment on given date</p><p dir="ltr">Temps - Temperature name given to each treatment. 22.5 = High, 12.5 = Low and Spike = Spike</p><p dir="ltr">Personnel - Initials of individuals taking observations on given day/date</p><p dir="ltr">Ro_ID - Identification number of rock</p><p dir="ltr">Cl_ID - identification number of clusters of egg masses on a given rock</p><p dir="ltr">EM_ID - identification number ofegg masses within a cluster on a given rock</p><p dir="ltr">IsEdge - y/n as to whether an egg mass is on the outside of a cluster or entirely surrounded by other egg masses</p><p dir="ltr">Riffle - Location where the rock was collected from</p><p dir="ltr">Infect% - estimated percent of infected eggs on given day/date</p><p dir="ltr">Hatch% - estimated percent of hatched eggs on a given dat/date from healthy eggs. infected eggs not included</p><p dir="ltr">D_Eggs - presence of dead eggs which are not infected 1 = yes, 0 = no. infected eggs not included</p><p dir="ltr">notes - notes for individual egg masses</p><p dir="ltr">Egg_count - number of egg in each egg mass</p><p dir="ltr">Neonate_count - number of neonates counted for each rock, only labelled in one egg mass per rock as they are counted at the rock scale. changed to neonates per rock in rStudio</p><p><br></p><p dir="ltr"><b>InfectTempScript.r -</b></p><p dir="ltr">r script analysing above data</p><p><br></p><p dir="ltr"><b>First5DaysScript.r -</b></p><p dir="ltr">same data set as above script but filter to only the first 5 days</p><p><br></p><p dir="ltr"><b>fungusHelpers.r -</b></p><p dir="ltr">functions used in previous two scripts</p><p><br></p><p dir="ltr"><b>PopulationModelScript.r -</b></p><p dir="ltr">script where the population modelling occurs.</p><p dir="ltr"><b>maxtempsurvivalmodelpreds</b> + <b>sustainestemphatchmodelpreds</b> are used in this script after being created in the InfectTempScript</p><p dir="ltr">LOW, SPIKE and HIGH life table .xlxs are also used in this script</p><p><br></p><p dir="ltr"><b>TempLoggers.r -</b></p><p dir="ltr">Script where the temp loggers from the lab experiment are uploaded and cut to the right date/time for visualisation</p><p><br></p><p><br></p><p><br></p><p><br></p><p><br></p>