ObjectiveTo explore factors associated with the psychological well-being of junior doctors in Australia.DesignQualitative study using semistructured interviews.SettingThree teaching hospitals in Brisbane, Queensland, Australia.ParticipantsFifteen junior medical officers (postgraduate year 2 doctors) employed across three hospitals in Queensland participated in the study.Main outcome measuresFifteen de-identified interviews were analysed. Four key themes emerged—workplace issues impacting on health and well-being; experiences of bullying and harassment; strategies to improve health and well-being; and barriers to seeking healthcare.ConclusionUnderlying system and cultural factors affect the health of junior doctors. Self-stigma particularly affects junior doctors and impacts on their healthcare seeking behaviours.