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Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium

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Version 2 2024-06-05, 10:50
Version 1 2019-12-02, 14:29
journal contribution
posted on 2024-06-05, 10:50 authored by Suganniiya K Ravintheran, Sumitra Sivaprakasam, Stella LokeStella Loke, Su Yin Lee, Ravichandran Manickam, Adibah Yahya, Lawrence Croft, Andrew Millard, Sivachandran Parimannan, Heera Rajandas
Complete genomes of xenobiotic-degrading microorganisms provide valuable resources for researchers to understand molecular mechanisms involved in bioremediation. Despite the well-known ability of Sphingomonas paucimobilis to degrade persistent xenobiotic compounds, a complete genome sequencing is lacking for this organism. In line with this, we report the first complete genome sequence of Sphingomonas paucimobilis (strain AIMST S2), an organophosphate and hydrocarbon-degrading bacterium isolated from oil-polluted soil at Kedah, Malaysia. The genome was derived from a hybrid assembly of short and long reads generated by Illumina HiSeq and MinION, respectively. The assembly resulted in a single contig of 4,005,505 bases which consisted of 3,612 CDS and 56 tRNAs. An array of genes involved in xenobiotic degradation and plant-growth promoters were identified, suggesting its’ potential role as an effective microorganism in bioremediation and agriculture. Having reported the first complete genome of the species, this study will serve as a stepping stone for comparative genome analysis of Sphingomonas strains and other xenobiotic-degrading microorganisms as well as gene expression studies in organophosphate biodegradation.

History

Journal

Scientific data

Volume

6

Article number

280

Pagination

1-6

Open access

  • Yes

ISSN

2052-4463

eISSN

2052-4463

Language

eng

Publication classification

C1 Refereed article in a scholarly journal

Copyright notice

2019, The Author(s)

Publisher

Nature Research

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