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Eulerian superpath approach to correct sequencing error in shotgun assembly

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journal contribution
posted on 2005-01-01, 00:00 authored by W Shi, Wanlei Zhou, W Zheng
This work describes an error correction method based on the Euler Superpath problem. Sequence data is mapped to an Euler Superpath dynamically by Merging Transformation. With restriction and guiding rules, data consistency is maintained and error paths are separated from correct data: Error edges are mapped to the correct ones and after substitution (of error edges with right paths), corresponding errors in the sequencing data are eliminated.

History

Journal

Online journal of bioinformatics

Volume

6

Issue

1

Pagination

65 - 73

Publisher

Pestsearch International

Location

Daisy Hill, Qld

ISSN

1443-2250

Language

eng

Notes

Reproduced with the kind permission of the copyright owner.

Publication classification

C1 Refereed article in a scholarly journal

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