Supporting data for “De novo assembly of the liver transcriptome of the European starling, Sturnus vulgaris” Richardson, Mark 2017, Supporting data for “De novo assembly of the liver transcriptome of the European starling, Sturnus vulgaris” [data collection], doi: 10.4225/16/5893999965ac2. Attached Files Name Description MIMEType Size Downloads final-s-vulgaris-transcriptome-trinotate.xls Data file 28.63MB 13 readme.txt Readme 1.82KB 104 s-vulgaris-final-cds.fasta Supporting material 21.98MB 25 s-vulgaris-final-cds1.pep Supporting material 8.34MB 95 s-vulgaris-final.gff Supporting material 35.84MB 30 s274.bam Supporting material application/x-gzip 1.23GB 11 s290.bam Supporting material application/x-gzip 1.08GB 11 unfitered-s-vulgaris-transcriptome-trin.xls Data file 45.53MB 87 unfitered-s-vulgaris-transcriptome.fasta Supporting material 73.35MB 23 Field of Research 060405 Gene Expression (incl. Microarray and other genome-wide approaches) Type of research activity Pure basic research Name of data collection Supporting data for “De novo assembly of the liver transcriptome of the European starling, Sturnus vulgaris” Creator(s) Richardson, Mark orcid.org/0000-0002-1650-0064 Date completed 2017-02-03 ANDS collection type dataset Description of resource 8 files Keyword(s) Sturnus vulgaris European starling de novo transcriptome assembly invasive species RNA-seq Language eng Summary The European starling, Sturnus vulgaris, is a prolific and worldwide invasive species that also has served as an important model for avian ecological and invasion research. Although the genome sequence recently has become available, no transcriptome data have been published for this species. Here, we have sequenced and assembled S. vulgaris liver transcriptome. A de novo transcriptome assembly constructed 18,678 protein-coding genes of high confidence that yield 23,945 non-redundant transcripts, of which we functionally annotated 82%. The transcriptome is similar to other passerine transcriptomes in terms of size and completeness. Further, our transcriptome assembly covers 87% of the predicted transcriptome of the draft genome currently available on NCBI. The data are publicly available on NCBI and DRO as a resource to other researchers. Contact details (email) m.richardson@deakin.edu.au Contact details (physical) Richardson, Mark Copyright notice ©This data is publicly available Access conditions This data is publicly available DOI 10.4225/16/5893999965ac2 Persistent URL http://hdl.handle.net/10536/DRO/DU:30091025 Document type: Data Collection Collections: Datasets collection Open Access Collection Centre for Integrative Ecology   Unless expressly stated otherwise, the copyright for items in DRO is owned by the author, with all rights reserved. Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au. Versions Version Filter Type Mon, 06 Feb 2017, 10:30:40 EST Tue, 07 Feb 2017, 08:45:52 EST Fri, 10 Feb 2017, 10:52:28 EST Mon, 13 Feb 2017, 08:43:02 EST Mon, 13 Feb 2017, 08:44:02 EST Mon, 13 Feb 2017, 08:44:49 EST Tue, 14 Feb 2017, 13:46:58 EST Thu, 16 Feb 2017, 20:05:43 EST Thu, 16 Feb 2017, 22:30:34 EST Tue, 21 Feb 2017, 09:20:48 EST Tue, 06 Jun 2017, 10:21:26 EST Sat, 12 Aug 2017, 03:01:17 EST Mon, 11 Sep 2017, 16:06:24 EST Thu, 14 Sep 2017, 16:37:31 EST Mon, 23 Oct 2017, 12:17:58 EST Fri, 27 Oct 2017, 21:15:02 EST Fri, 27 Oct 2017, 21:19:24 EST Wed, 06 Dec 2017, 06:50:00 EST Wed, 06 Dec 2017, 10:41:40 EST Fri, 07 Sep 2018, 17:47:35 EST Filtered Full Citation counts:   Cited 0 times in TR Web of Science Cited 0 times in Scopus Search Google Scholar Access Statistics: 768 Abstract Views, 399 File Downloads  -  Detailed Statistics Created: Fri, 03 Feb 2017, 10:00:00 EST