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Efficient neural spike sorting using data subdivision and unification

Hassan, MU, Veerabhadrappa, Rakesh and Bhatti, Asim 2021, Efficient neural spike sorting using data subdivision and unification, PLoS ONE, vol. 16, no. 2, pp. 1-14, doi: 10.1371/journal.pone.0245589.

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Title Efficient neural spike sorting using data subdivision and unification
Author(s) Hassan, MU
Veerabhadrappa, RakeshORCID iD for Veerabhadrappa, Rakesh orcid.org/0000-0001-6876-1437
Bhatti, Asim
Journal name PLoS ONE
Volume number 16
Issue number 2
Article ID ARTN e0245589
Start page 1
End page 14
Total pages 14
Publisher Public Library Science
Place of publication San Francisco, Calif.
Publication date 2021-02-10
ISSN 1932-6203
1932-6203
Keyword(s) ALGORITHMS
CLASSIFICATION
FEATURE-SELECTION
FUTURE
Multidisciplinary Sciences
MULTI-WAVELETS
NEURONS
RECORDINGS
ROBUST
Science & Technology
Science & Technology - Other Topics
SPLINE SUPER-FUNCTIONS
Summary Neural spike sorting is prerequisite to deciphering useful information from electrophysiological data recorded from the brain, in vitro and/or in vivo. Significant advancements in nanotechnology and nanofabrication has enabled neuroscientists and engineers to capture the electrophysiological activities of the brain at very high resolution, data rate and fidelity. However, the evolution in spike sorting algorithms to deal with the aforementioned technological advancement and capability to quantify higher density data sets is somewhat limited. Both supervised and unsupervised clustering algorithms do perform well when the data to quantify is small, however, their efficiency degrades with the increase in the data size in terms of processing time and quality of spike clusters being formed. This makes neural spike sorting an inefficient process to deal with large and dense electrophysiological data recorded from brain. The presented work aims to address this challenge by providing a novel data pre-processing framework, which can enhance the efficiency of the conventional spike sorting algorithms significantly. The proposed framework is validated by applying on ten widely used algorithms and six large feature sets. Feature sets are calculated by employing PCA and Haar wavelet features on three widely adopted large electrophysiological datasets for consistency during the clustering process. A MATLAB software of the proposed mechanism is also developed and provided to assist the researchers, active in this domain.
Language eng
DOI 10.1371/journal.pone.0245589
Indigenous content off
Field of Research 170205 Neurocognitive Patterns and Neural Networks
100402 Medical Biotechnology Diagnostics (incl Biosensors)
080109 Pattern Recognition and Data Mining
Socio Economic Objective 970106 Expanding Knowledge in the Biological Sciences
HERDC Research category C1 Refereed article in a scholarly journal
Free to Read? Yes
Persistent URL http://hdl.handle.net/10536/DRO/DU:30148216

Document type: Journal Article
Collections: Institute for Intelligent Systems Research and Innovation (IISRI)
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Citation counts: TR Web of Science Citation Count  Cited 1 times in TR Web of Science
Scopus Citation Count Cited 2 times in Scopus Google Scholar Search Google Scholar
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Created: Mon, 22 Feb 2021, 11:48:22 EST

Every reasonable effort has been made to ensure that permission has been obtained for items included in DRO. If you believe that your rights have been infringed by this repository, please contact drosupport@deakin.edu.au.